Task Create a GUI where you will display summarisation of different disorder predictions
computer science
Description
Final Project
Task Create a GUI where you will display summarisation of different disorder predictions (1) (from different prediction programs) for individual protein sequences. Also you need to access information from the curration file (2) and represent it in the TextFields.
The different disorder predicitions
1. RONN – for this please use biojava structure (jar inclueded one of the previous lecture)
(how to run? https://biojava.org/wiki/BioJava:CookBook3:ProteinDisorder)
2. IUPRED – short
3. IUPRED – long
4. Espitz – NMR
5. Espitz – X-ray
6. Disopred
2-6. The files are available in google drive – in folders
named according to the prediction method. For each
method the treshold for disorder is above 0.5.
For each amino acids you need to count how many
from these methods predicted it as disordered (20
points) (see Fig. 2.) and represent it in a Barchart
(somehow similarly to here in the Mobi-Lite line:
http://mobidb.bio.unipd.it/Q13541/predictions)
